Centre Attributed Publications 2017

Bracher A, Whitney, SM, Hartl Fu, Hayer-Hartl M (2017) Biogenesis and Metabolic Maintenance of Rubisco. Annual Review of Plant Biology 68:29-60. (JIF 25.14)

Busch, F.A., Sage, R.F., Farquhar, G.D. (2017) Plants increase CO2 uptake by assimilating nitrogen via the photorespiratory pathway. Nature Plants 4: 46-54 (JIP 10.3)

Busch F.A., Sage R.F. (2017) The sensitivity of photosynthesis to O2 and CO2 concentration identifies strong Rubisco control above the thermal optimum.New Phytologist 213: 1036-1051 (JIP 7.9)

Busch F.A., Deans R.M. Holloway-Phillips M.-M. (2017) Estimation of photorespiratory fluxes by gas exchange. Book chapter in Fernie A.R., Bauwe H., Weber A.P.M., eds., Photorespiration. Methods in Molecular Biology, vol 1653, Humana Press, New York, pp 1-15

Clayton H, Saladié M, Rolland V, Sharwood RE, Macfarlane T, Ludwig M. (2017) Loss of the Chloroplast Transit Peptide from an Ancestral C3 Carbonic Anhydrase Is Associated with C4 Evolution in the Grass Genus Neurachne. Plant Physiology 173 (3): 1648-16582. (JIP 7.4)

Henry R.J., Rangan P., Furtado A., Busch F.A., FarquharG.D. (2017) Does C4 photosynthesis occur in wheat seeds? Plant Physiology 174: 1992-1995 (JIP 7.4)

Evans JR, Morgan PB and von Caemmerer S (2017) Light quality affects chloroplast electron transport rates estimated from chlorophyll fluorescence measurements. Plant & Cell Physiology 58, 1652-1660 (JIF 4.8)

Farquhar G.D., Busch F.A. (2017) Changes in the chloroplastic CO2 concentration explain much of the observed Kok effect: a model. New Phytologist 214:570-584 (JIF 7.9)

Garg H, Loughlin PC, Willows RD, Chen M (2017) The C21-formyl group in chlorophyll f originates from molecular oxygen J. Biol. Chem (JIF 4.2)

Groszmann M, Osborn HL and Evans JR (2017) Carbon dioxide and water transport through plant aquaporins. Plant Cell and Environment 40, 938-961. Invited review for Special issue on Water transport (JIF: 6.5)

Hernandez-Prieto MA, Li Yq, Postier BL, Blankenship RE, Chen MI (2017) Far-red light promotes biofilm formation in the cyanobacterium Acaryochloris marina Environmental Microbiology (JIF 3.8)

Hernandez-Prieto, Yuankui Lin and Min Chen. The complex transcriptional response of Acaryochloris marina to different oxygen level. G3: Genes, Genomes, Genetics published by the Genetics Society of America. February 2017 (JIP 2.9)

Heureux AMC, Young J, Whitney SM, Eason-Hubbard MR, Lee RBY, Sharwood RE, Rickaby REM (2017) The role of Rubisco kinetics and pyrenoid morphology in shaping the CCM of haptophyte microalgae. Journal of Experimental Botany 68: 3959-3969. (JIF 6.5)

Li Yq, Vella N, Chen M, (2017) Characterization of isolated Photosystem I from Halomicronema hongdechloris, a chlorophyll f producing cyanobacterium, Photosynthetica (JIP 1.4)

Meacham, K, Sirault X, Quick WP, von Caemmerer S and Furbank RT (2017). Diurnal solar energy conversion and photoprotection in rice canopies. Plant Physiology. (JIF 7.4)

Niinemets Ü, Berry JA, von Caemmerer S, Ort DR, Parry MAJ, Poorter, H (2017) Photosynthesis: ancient, essential, complex, diverse and in need of improvement in a changing world. The 17th International Congress on Photosynthesis Research – Photosynthesis in a Changing World, 7-12 August, 2016, Maastricht, The Netherlands. New Phytologist, 213(1): 43-47 (JIF 7.9)

Osborn, HL, Alonso-Cantabrana, H. Sharwood RE, Covshoff, S, Evans JR, Furbank RT, von Caemmerer, (2017) Effects of reduced carbonic anhydrase activity on CO2 assimilation rates in Setaria viridis: a transgenic analysis. Journal of Experimental Botany 68 (2): 299-310 (JIF 6.5)

Potgieter AP, Barbara George-Jaeggli, Scott C. Chapman, Kenneth Laws, Luz A. Suárez Cadavid, Jemima Wixted, James Watson, Mark Eldridge, David

  1. Jordan and Graeme L. Hammer. 2017. Multi- Spectral Imaging from an unmanned Aerial vehicle Enables the Assessment of Seasonal Leaf Area Dynamics of Sorghum Breeding Lines. Frontiers in Plant Science 8:1532. (JIF 4.3)

Rae BD, Long BM, Förster B, Nguyen ND, Atkinson N, velanis CN, Hee WY, Mukherjee B, Price GD, and McCormick AJ (2017) Progress and challenges of engineering a biophysical carbon dioxide concentrating mechanism into higher plants. Journal of Experimental Botany 68: 3717-37 (JIF 6.5)

Rogers A et al. 2017 A roadmap for improving the representation of photosynthesis in Earth system models. New Phytologist 213 (22-42) (JIF 7.9)

Rolland, V, Benjamin D Rae, Benedict M Long. Setting sub-organellar sights: accurate targeting of multi-transmembrane-domain proteins to specific chloroplast membranes. Journal of Experimental Botany, volume 68, Issue 18, 2 November 2017, Pages 5013–5016 (JIF 6.5)

Salese-Smith CE, Robert Sharwood, Wataru Sakamoto, David Stern (2017) The Rubisco Chaperone BSD2 May Regulate Chloroplast Coverage in Maize Bundle Sheath cells. Plant Physiology 175(4):1624-1633. (JIF 7.4)

Sharwod, RE (2017) A step forward to building an algal pyrenoid in higher plants New Phytologist 214: 496-499 Pages: 494-510. (JIF 7.9)

Sharwood, RE (2017) Engineering chloroplasts to improve Rubisco catalysis: prospects for translating improvements into food and fiber crops. New Phytologist 213(2):494-510. (JIF 7.9)

Sharwood RE, Crous KY, Whitney SM, Ellsworth DS, Ghannoum O (2017) Linking photosynthesis and leaf N allocation under future elevated CO2 and climate warming in Eucalyptus globulus. Journal of Experimental Botany 68: 1157-1167. 68 (5) 1157-1167 (JIF 6.5)

Silva Perez V, Furbank RT, Condon AG and Evans JR (2017) Biochemical model of C3 photosynthesis applied to wheat at different temperatures. Plant Cell and Environment. 40: 1552-1564 after Plant, Cell and Environment. doi: 10.1111/pce.12953 (JIP 6.5)

Sonawane BV, Sharwood RE, von Caemmerer S, Whitney SM, Ghannoum O. (2017) Short-term thermal photosynthetic responses of C4 grasses are independent of the biochemical subtype. Journal of Experimental Botany 68(20):5583-5597. (JIF 6.5)

Tcherkez G., Gauthier P., Buckley T.N., Busch F.A., Barbour M.M., Bruhn D., Heskel M.A., Gong x.Y., Crous K.Y., Griffin K., Way D., Turnbull M., Adams M.A., Atkin O.K., Farquhar G.D., Cornic G. (2017) Leaf day respiration: low CO2 flux but high significance for metabolism and carbon balance. New Phytologist, 216, 986-1001 (JIF 7.9)

Tolleter D, Chochois V, Poiré R, Price GD and Badger MR (2017). Measuring CO2 and HCO3-permeabilities of isolated chloroplasts using a MIMS-18O approach. Journal of Experimental Botany 68: 3915-24. (JIF 6.5)

von Caemmerer S, Oula Ghannoum, Furbank RT (2017). C4 photosynthesis: 50 years of discovery and innovation. Journal of Experimental Botany 68, 97-102. Special Issue Editorial. (JIF 6.53)

Wilson RH, Martin-Avila E, Conlan C, Whitney SM (2017) An improved Escherichia coli screen for Rubisco identifies a protein-protein interface that can enhance CO2-fixation kinetics. Journal of Biological Chemistry (JIF 4.2)

Wilson RH, Whitney SM (2017) Improving CO2 fixation by enhancing Rubisco performance. Directed Enzyme Evolution: Advances and Applications, ed Alcalde M (Springer International Publishing, Cham), pp 101-126.

Wu, A., Doherty, A., Wang, E., and Hammer, G.L. (2017) Simulating daily field crop canopy photosynthesis: an integrated software package. Functional Plant Biology (JIF 2.49)

Young, J.N., Heureux A.M.C., Rickaby, R.E.M., Morel, F.M.M., Whitney, S.M., Sharwood, R.E. Rubisco Extraction and Purification from Diatoms. (2017) Bio-Protocols. doi.org/10.21769/ BioProtoc.2191.

2017 publications by Centre members (Centre not attributted)  

Alam, M.M., van Oosterom, E.J., Cruickshank, A., Jordan, D.R. and Hammer, G.L. (2017). Predicting tillering of diverse sorghum germplasm across environments. Crop Science, 57: 78-87

Bahar, NHA, Ishida FY, Weerasinghe LK, Guerrieri R, O’Sullivan OS, Bloomfield KJ, Asner GP, Martin RE, Lloyd J, Malhi Y, Phillips OL, Meir P, Salinas N, Cosio EG, Domingues T, Quesada CA, Sinca F, vega AE, Ccorimanya PPZ, Aguila-Pasquel J, Huaypar KQ, Torres IC, Loayza RB, TapiaYP, Ovalle JH, Long BM, Evans JR and Atkin OK (2017) Leaf-level photosynthetic capacity in lowland Amazonian and high-elevation, Andean tropical moist forests of Peru. New Phytologist 214, 1002-1018

Baker JM, Riester CJ, Skinner BM, Newell AW, Swingley WD, Madigan MT, Jung DO, Asao M, Chen M, Loughlin PC, Pan H, Lin Y, Li Y, Shaw J, Prado M, Sherman C, Tang JK, Blankenship RE, Zhao T, Touchman JW, Sattley WM (2017) Genome Sequence of Rhodoferax antacticus ANT.BRt; A psychrophilic purple nonsulfur bacterium from an Antarctic microbial mat, Microorganisms 5:8 doi:10.3390/ microorganisms5010008.

Bledsoe, Samuel W, Clémence Henry, Cara A. Griffiths, Matthew J. Paul, Regina Feil, John E. Lunn, Mark Stitt, and L. Mark Lagrimini. 2017 The role of Tre6P and SnRK1 in maize early kernel development and events leading to stress-induced kernel abortion. BMC Plant Biology

Borrell, Andrew and Matthew Reynolds. 2017 Integrating islands of knowledge for greater synergy and efficiency in crop research. Food and energy Security.

Chauhan YS, Allard S, Williams R, Williams B, Mundree S, Chenu K, Rachaputi NC. (2017). Characterisation of chickpea cropping systems in Australia for major abiotic production constraints. Field Crops Research. 204:120-134.

Chenu K, Porter JR, Martre P, Basso B, Chapman SC, Ewert F, Bindi M, Asseng S. (2017). Contribution of crop models to adaptation in wheat. Trends in Plant Science. 22: 472-490

Clarke, S.J., J. McLean, B. George-Jaeggli, J. Eyre and D. Rodriguez. 2017. understanding the importance of matching sorghum hybrids and agronomy to site and seasonal conditions. 18th Australian Agronomy Conference. Ballarat, Australia. GRDC-funded Tactical Agronomy project.

Crisp, P. A., Ganguly, D., Smith, A. B., Murray, K. D., Estavillo, G. M., et al. (2017). “Rapid recovery gene downregulation during excess-light stress and recovery in Arabidopsis.” The Plant Cell, 10.1105/ tpc.16.00828

Christopher M, Chenu K, Jennings R, Fletcher S, Butler D, Borrell, Christopher J. (2017). QTL for stay- green traits in wheat in well-watered and water- limited environments. Field Crops Research. In press. https://doi.org/10.1016/j.fcr.2017.11.003

Diatloff E, Mace ES, Jordan DR, Filleur S, Tai S, Schmidt S, Godwin ID. 2017. Analysis of the vegetative nitrogen response of sorghum lines containing different alleles for nitrate reductase and glutamate synthase. Molecular Breeding. 37: 11

Drake JE, vårhammar A, Kumarathunge D, Medlyn BE, Pfautsch S, Reich PB, Tissue DT, Ghannoum O, Tjoelker MG (2017). A common and broad thermal niche among geographically diverse populations of the widely distributed tree species Eucalyptus tereticornis: no evidence for adaptation to climate of origin. Global Change Biology

Flohr BM, Hunt JR, Kirkegaard JA and Evans JR (2017) Water and temperature stress define the optimal flowering period for wheat in south-eastern Australia. Field Crops Research 209: 108-119.

George-Jaeggli, B., M.Y. Mortlock and A.K. Borrell. 2017. Bigger is not always better: Reducing leaf area helps stay-green sorghum use soil water more slowly. Environmental and Experimental Botany 138: 119-129. GRDC-funded Stay-green project.

Ivakov, A, Anna Flis, Federico Apelt Maximilian Fuenfgeld, ulrike Scherer, Mark Stitt, Friedrich Kragler, Kris vissenberg, Staffan Persson, Dmitry Suslov. (2017) Cellulose synthesis and cell expansion are regulated by different mechanisms in growing Arabidopsis hypocotyls. The Plant Cell 29 (6): 1305-1315.

Joaquín Giner-Lamia, Rocío Robles-Rengel, Miguel A. Hernández-Prieto, M. Isabel Muro-Pastor, Francisco J. Florencio, Matthias E. Futschik. Identification of the direct regulon of NtcA during early acclimation to nitrogen starvation in the cyanobacterium Synechocystis sp. PCC 6803 Nucleic Acids Research,

Jin-Long Shang, Zhong-Chun Zhang, xiao-Yue Yin, Min Chen, Fu-Hua Hao, Kai, Wang, Jun-Li Feng, Hai-Feng xu, Yan-Chao Yin, Hui-Ru Tang, & Bao- Sheng Qiu (2017) uv-B induced biosynthesis of a novel sunscreen compound in solar radiation and desiccation tolerant cyanobacteria. Environmental Microbiol. doi:10.1111/1462-2920.13972.

Joshi, D.C., Singh, v., Hunt, C., Mace, E., van Oosterom, E., Sulman, R., Jordan, R., and Hammer, G. (2017) Development of a phenotyping platform for high throughput screening of nodal root angle in sorghum. Plant Methods, 13:56

Li C, Jackson P, Lu x, xu C, Cai Q, Basnayake J, Lakshmanan P, Ghannoum O, Fan Y (2017). Genetic variation in transpiration efficiency due to differences in photosynthesis capacity among sugarcane-related clones. Journal of Experimental Botany 68, 2377-2385 (Yunnan Sugarcane Research institute, China)

Li Z-K, Yin Y-C, Zhang L-D, Zhang Z-C, Dai G-Z, Chen M, Qiu B-S (2017) The identification of isiA proteins binding chlorophyll d in the cyanobacterium Acaryochloris marina, Photosynthesis Research DOI: 10.1007/s11120-017-0379-6.

Ly D, Chenu K, Gauffreteau A, Rincent R, Huet S, Gouache D, Martre P, Charmet G. (2017). Nitrogen nutrition index predicted by a crop model improves the genomic prediction of grain number for a bread wheat core collection. Field Crops Research. 214, 331-340.

Machingura MC, Bajsa-Hirschel J, Laborde SM, Schwartzenburg JB, Mukherjee B, Mukherjee A, Pollock Sv, Förster B, Price GD and Moroney Jv (2017) Identification and characterization of a solute carrier, CIA8, involved in inorganic carbon acclimation in Chlamydomonas reinhardtii. Journal of Experimental Botany 68: 3879-90. (Non-Centre and RIPE).

Marshall-Colon, A, Long, SP, Allen, DK, Allen, G, Beard, DA, Benes, B, von Caemmerer, S, Christensen, AJ, Cox, DJ, Hart, JC, Hirst, PM, Kannan, K, Katz, DS, Lynch, J, Millar, AJ, Panneerselvam, B, Price, ND, Prusinkiewicz, P, Raila, D, Shekar, RG, Shrivastava,

S, Shukla, D, Srinivasan, v, Stitt, M, Turk, MJ, voit, EO, Wang, Y, Yin, x, Zhu, x (2017) Crops in silico: Generating virtual crops using an integrative and multi-scale modeling platform Frontiers in Plant Science

Majumder ELW, Wolf BW, Liu H, Berg RH, Timlin JA, Chen M, Blankenship RE (2017) Subcellular pigment distribution is altered under far red light acclimation in cyanobacteria that contain chlorophyll f, Photosynthesis Research DOI 10.1007/s11120-017- 0428-1.

MacMillan CP and Birke H et al (2017) Tissue and cell-specific transcriptomes in cotton reveal the subtleties of gene regulation underlying the diversity of plant secondary cell walls. BMC Genomics 18 (1):539. (Output from previous employment of Hannah Birke with CSIRO.)

Martin AP, Christopher W. Brown, Duc Q. Nguyen, William M. Palmer Robert T. Furbank, Caitlin S. Byrt, Christopher J. Lambrides, Christopher P. L. Grof (2017). Cell Wall Development in an Elongating Internode of Setaria. In: Douest et al. Genetics and genomics of Setaria. Springer international Publishing.

Meyerink SW, Ellwood MJ, Maher WA, Price GD, and Strzepek R (2017) Effects of iron limitation on silicon uptake kinetics and elemental stoichiometry in two Southern Ocean diatoms, Eucampia antarctica and Proboscia inermis, and the temperate diatom, Thalassiosira pseudonana. Limnology & Oceanography 62: 2445-2462

Mushtaq S, An-Vo D-A, Christopher M, Zheng B, Chenu K, Chapman SC, Christopher JT, Stone RC, Frederiks TM, Monirul Alam GM. (2017). Economic assessment of wheat breeding options for potential improved levels of post head-emergence frost tolerance. Field Crops Research. 213: 75-88.

Nguyen HT, Meir P, Sack L, Evans JR, Oliveira RS, and Ball MC (2017) Leaf water storage increases with salinity and aridity in the mangrove Avicennia marina: integration of leaf structure, LMA, osmotic adjustment, and access to multiple water sources. Plant Cell and Environment DOI: 10.1111/pce.12962

Onoda, Y Wright IJ, Evans JR, Hikosaka K, Kitajima Kaoru, Niinemets u, Poorter H, Tosens T and Westoby M (2017) Physiological and structural trade- offs underlying the leaf economics spectrum. New Phytologist 214,1447-1463

Pathare vS, Crous KY, Cooke J, Creek D, Ghannoum O, Ellsworth DS (2017). Water availability controls stomatal conductance and elevated CO2-induced photosynthetic enhancement in herbaceous species of a periodically dry Eucalyptus woodland. Global Change Biology

Peng Wang, Roxana Khoshravesh, Shanta Karki, Ronald Tapia, C. Paolo Balahadia, Anindya Bandyopadhyay, W. Paul Quick, Robert Furbank, Tammy L. Sage and Jane A. Langdale. Re-creation of a Key Step in the Evolutionary Switch

Gowik, u, Stefanie Schulze, Montserrat Saladié, Vivien Rolland, Sandra K. Tanz, Peter Westhoff, Martha Ludwig; A MEM1-like motif directs mesophyll cell-specific expression of the gene encoding the C4 carbonic anhydrase in Flaveria. J Exp Bot 2016; 68 (2): 311-320. doi: 10.1093/jxb/erw475

voss-Fels KP, Robinson H, Mudge SR, Richard C, Newman S, Wittkop B, Stahl A, Friedt W, Frisch M, Gabur I, Miller-Cooper A, Campbell BC, Kelly A, Fox G, Christopher J, Christopher M, Chenu K, Franckowiak J, Mace ES, Borrell AK, Eagles H, Jordan DR, Botella JR, Hammer G, Godwin ID, Trevaskis B, Snowdon RJ, Hickey LT (2017) vERNALIZATION1 modulates root system architecture in wheat and barley. Molecular Plant 11 (1):226-229.

Watson J, Zheng B, Chapman S, Chenu K. (2017). Projected impact of future climate on drought patterns across the Australian wheatbelt. Journal of Experimental Botany. 68: 5907–5921. from C3 to C4 Leaf Anatomy. Current Biology 2017.

Pornsiriwong, W., Estavillo, G. M., et al. (2017). “A chloroplast retrograde signal, 3’-phosphoadenosine 5’-phosphate, acts as a secondary messenger in abscisic acid signaling in stomatal closure and germination.” eLife 6: e23361.

Rizal G, Shanta Karki, vivek Thakur, Samart Wanchana, Hugo Alonso-Cantabrana, Jacque Dionora, John E. Sheehy, Robert Furbank, Susanne von Caemmerer, William Paul Quick. 2017. A sorghum (Sorghum bicolor) mutant with low Carbon Isotope Discrimination. PLOS Genetics 12 (6)

Scafaro AP, xiang S, Long BM, Bahar NHA, Weerasinghe LK, Creek D, Evans JR, Reich PB, Atkin OK (2017) Strong thermal acclimation of photosynthesis in tropical and temperate wet-forest tree species: the importance of altered Rubisco content. Global Change Biology 23, 2783-2800

Singh, v., Nguyen, C.T., McLean, G., Chapman, S.C., Zheng, B., van Oosterom, E.J., and Hammer, G.L. (2017) Quantifying high temperature risks and their potential effects on sorghum production in Australia. Field Crops Research, 211: 77-88.

Yongfu T, Mace ES, Tai S, Cruickshank A, Zhao x, Campbell B, van Oosterom E, Godwin I, Botella JR, Jordan DR. (2017) Whole-genome analysis of seed size candidate genes in Sorghum bicolor reveals signatures of artificial selection and insights into parallel domestication in cereal crops. Frontiers in Plant Science. 8:1237

Zang S-S, Jiang H-B, Song W-Y, Chen M, Qiu B-S (2017) Characterization of the sulfur-formation (suf) genes in Synechocystis sp. PCC 6803 under photoautotrophic and hetero-trophic growth conditions, Planta 246 (5): 927-938.

Zhao M, Tan H-T, Scharwies J, Levin K, Evans, JR and Tyerman, SD (2017) Association between water and carbon dioxide transport in leaf plasma membranes: assessing the role of aquaporins. Plant Cell and Environment 40, 789-801

Ziems LA, Franckowiak JD, Platz GJ, Mace ES, Park RF, Singh D, Jordan DR, Hickey LT, 2017. Investigating successive Australian barley breeding populations for stable resistance to leaf rust. Theor Appl Genet. 130 (11): 2463-2477